rs13360460 chr5:131423274 T>C
- Sequence
tatactgcccaaaagagggggcaa[T/C]aggcatgctttcgtagacccagct
- ASB in cell types
- A549 (lung carcinoma) GM19099 (female B-cells Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.37 | 0.10 | 1.52 | -0.41 | Weak Concordant | |||
| RAD21_HUMAN | 1.61 | -0.07 | 1.72 | n/a | n/a | |||
| STAG1_HUMAN | 0.99 | -0.81 | 1.22 | n/a | n/a |
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Motif analysis
