rs16910241 chr12:14769975 C>A
- Sequence
ggggattcccggcaacttggcgac[C/A]tgcaggtgatctggcctttcatgc
- ASB in cell types
- foreskin keratinocyte HEK293 (embryonic kidney) neural cell HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN RFOX2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.70 | 1.07 | 1.50 | -3.13 | Discordant | |||
| RFOX2_HUMAN | -1.37 | 2.54 | 1.25 | n/a | n/a | |||
| RAD21_HUMAN | 0.06 | 2.11 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid