rs56347552 chr7:156895749 G>A
- Sequence
atgatgacacctcctggccaccaa[G/A]atatgctgtgtggatatgaagttt
- ASB in cell types
- K562 (myelogenous leukemia) GM19239 (male B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ATF3_HUMAN STAG1_HUMAN CTCF_HUMAN ATF4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | 1.20 | n/a | 1.75 | n/a | No Hit | |||
| STAG1_HUMAN | 1.58 | 0.19 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.31 | 0.55 | 1.32 | n/a | No Hit | |||
| ATF4_HUMAN | 1.73 | -2.77 | 1.50 | n/a | No Hit | |||
| ATF2_HUMAN | 2.63 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Testis