rs58050454 chr15:55108937 T>G
- Sequence
tgtgtctcagaattagtgaggttt[T/G]tttttttttgtttttttttgtttt
- ASB in cell types
- neural cell GM18486 (Lymphoblastoid Cell Lines) ID00014 (lymphoblastoid cell, DiGeorge syndrome)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.55 | -0.46 | 1.75 | n/a | No Hit | |||
| SMC3_HUMAN | 3.38 | -3.52 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.13 | -1.92 | 1.00 | n/a | n/a |
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