rs58235267 chr2:63050708 C>G

Sequence
gcgggggcgcgcggaggtaacccc[C/G]ggctcgcgcagccattgcccggct
ASB in cell types
HepG2 (hepatoblastoma) Kelly (neuroblastoma)
ASB for transcription factors
RBM25_HUMAN PKNX1_HUMAN MYCN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN n/a 2.88 1.003.3·10-13 2.00 n/a n/a
PKNX1_HUMAN -0.11 0.48 1.009.4·10-3 1.33 n/a No Hit
MYCN_HUMAN -2.41 2.65 1.000.01 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI prostate-specific antigen levels (conditioned on lead snps)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Pancreas,  Stomach,  Testis,  Thyroid,  Whole_Blood

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