rs329379 chr3:138174902 G>T
- Sequence
ccaactttaataagtatagccacc[G/T]cctgggtgtagactcctgcaaaat
- ASB in cell types
- T47D (invasive ductal carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN KLF1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 0.04 | 1.20 | 3.14 | Discordant | |||
| KLF1_HUMAN | 2.07 | -2.11 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.00 | 0.25 | 1.59 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid