rs525725 chr15:65304946 A>G
- Sequence
tctttttctagtgaagcttcttcc[A/G]acaagttagaagtatttacttcag
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- SMCA4_HUMAN TAL1_HUMAN PKNX1_HUMAN HDAC1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | -1.13 | 1.99 | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | -0.41 | 1.75 | 2.00 | n/a | No Hit | |||
| PKNX1_HUMAN | 0.54 | 1.60 | 1.78 | n/a | No Hit | |||
| HDAC1_HUMAN | -1.83 | 1.75 | 2.00 | n/a | n/a | |||
| PRD10_HUMAN | -3.00 | 2.17 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Testis, Whole_Blood