rs1000262 chr19:17859818 C>G
- Sequence
tccatagccaatgaagacgcgggt[C/G]gctttgagtgcggggcagagaagc
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) breast tumor HCASMC (Human coronary artery smooth muscle cells) HEK293 (embryonic kidney)
- ASB for transcription factors
- TCF21_HUMAN ESR1_HUMAN CDN1B_HUMAN JUN_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 2.19 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 3.17 | 0.43 | 1.83 | n/a | No Hit | |||
| CDN1B_HUMAN | 2.17 | 0.21 | 2.25 | n/a | n/a | |||
| JUN_HUMAN | 1.36 | 0.17 | 2.11 | n/a | No Hit | |||
| BRD2_HUMAN | 1.15 | 0.09 | 1.67 | n/a | n/a |
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