rs1000427 chr22:36494058 G>A

Sequence
gaaggcagtgctgaagctaacaac[G/A]tgaggctggcgtttccctaagact
ASB in cell types
CD14+ monocytes upper lobe of left lung GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.61 0.39 1.1·10-41.00 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  infant head circumference,  irritible bowel syndrome,  schizophrenia
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Small_Intestine_Terminal_Ileum,  Thyroid,  Whole_Blood

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