rs1002823 chr14:32308289 A>G

Sequence
atttattgctgccagtgtactttg[A/G]tccagtactcaaatattatcacca
ASB in cell types
HEK293 (embryonic kidney) CFPAC-1(pancreatic ductal adenocarcinoma) MCF7 WS8 cells
ASB for transcription factors
FOXA1_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.30 0.83 1.006.3·10-4 1.68 n/a No Hit
FOXA2_HUMAN 2.12 0.61 4.8·10-31.00 1.65 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  body mass index (bmi),  chronic kidney disease,  college completion,  hdl cholesterol,  years of education

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