rs1003710 chr1:40374681 A>G
- Sequence
gaggagggaagtgagatggcggaa[A/G]ggaaaactgcttaaatgattttta
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
- ASB for transcription factors
- SPI1_HUMAN ELF1_HUMAN CTCF_HUMAN HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.28 | 1.37 | 1.50 | 3.47 | Concordant | |||
| ELF1_HUMAN | 0.22 | 1.77 | 1.17 | 2.59 | Concordant | |||
| CTCF_HUMAN | 1.14 | 0.25 | 1.17 | n/a | No Hit | |||
| HTF4_HUMAN | -1.11 | 1.63 | 1.00 | n/a | No Hit | |||
| ZN687_HUMAN | -1.44 | 1.74 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
