rs1003993 chr20:10434703 T>C

Sequence
ccttcctgagggcttacagggaag[T/C]gcggagtttcgcagctcgtactct
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) monocyte-derived dendritic cells Th1-cells
ASB for transcription factors
SPI1_HUMAN TBX21_HUMAN CTCF_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.67 0.29 4.8·10-111.00 1.45 -1.80 Weak Concordant
TBX21_HUMAN 2.08 -0.00 4.5·10-31.00 1.17 n/a No Hit
CTCF_HUMAN 1.23 -0.12 7.3·10-31.00 1.16 n/a No Hit
FOXK2_HUMAN 2.33 -1.93 0.021.00 1.00 n/a No Hit
ETS1_HUMAN 1.65 -1.01 0.031.00 1.00 n/a No Hit
Items per page:
1 – 5 of 6

Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Spleen,  Thyroid,  Whole_Blood

Download