rs1004323 chr19:3643095 G>A

Sequence
ccacacattggatgctccgccccc[G/A]cgcacccacatgcagtgtatgtac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EGR1_HUMAN NRF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN 2.08 n/a 9.8·10-71.00 2.00 -3.84 Concordant
NRF1_HUMAN 1.61 -3.73 5.7·10-41.00 2.00 -3.09 Concordant
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Motif analysis

EGR1_HUMAN Concordant
EGR1_HUMAN pic

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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