rs1004890 chr22:37696885 G>A

Sequence
ggtatctgcgccccgcctgcctcc[G/A]ccccgccccttgttctggtttgtc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) esophagus squamous epithelium
ASB for transcription factors
BHE40_HUMAN MEF2B_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BHE40_HUMAN n/a 2.35 1.002.1·10-5 1.50 n/a No Hit
MEF2B_HUMAN -2.86 2.10 1.004.8·10-4 1.33 n/a No Hit
STAG1_HUMAN -0.41 1.81 1.000.04 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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