rs1004938 chr13:51034952 C>A
- Sequence
tacactgttggaatagacagtaag[C/A]aagtgtccactttatgggaaagac
- ASB in cell types
- 22RV1 (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.67 | 0.01 | 1.65 | 2.73 | Discordant | |||
| FOXA1_HUMAN | 1.13 | 0.11 | 1.80 | -4.05 | Concordant |
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Motif analysis
