rs1005301 chr1:13930369 C>T
- Sequence
ggtgaaccaccagcagagggcagc[C/T]tacctgtcgacccacaaatgagaa
- ASB in cell types
- HeLa (cervical adenocarcinoma) GM19240 (B cells Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) WA09 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.59 | 0.06 | 1.51 | -1.74 | Weak Concordant | |||
| STAG1_HUMAN | 1.55 | -0.94 | 1.00 | n/a | n/a |
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Motif analysis
