rs1005436 chr1:153549456 G>A

Sequence
ccgaaggcagccaggaaggcaaga[G/A]ttttttccatgctagcccagtgac
ASB in cell types
A549 (lung carcinoma) MCF10A (breast epithelial cells) HCT-116 (colon carcinoma)
ASB for transcription factors
TEAD4_HUMAN GCR_HUMAN EP300_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD4_HUMAN -3.16 3.56 1.009.5·10-8 1.00 4.93 Concordant
GCR_HUMAN -0.64 2.06 1.003.4·10-4 2.00 n/a No Hit
EP300_HUMAN -0.89 1.92 1.004.6·10-4 2.00 n/a n/a
JUN_HUMAN 0.23 1.58 1.000.02 1.76 n/a No Hit
RAD21_HUMAN -0.78 1.29 1.000.04 1.40 n/a n/a
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Motif analysis

TEAD4_HUMAN Concordant
TEAD4_HUMAN pic

Genetic associations

GRASP homa-ir,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Spleen,  Stomach,  Testis,  Thyroid

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