rs1005948 chr19:35485019 G>A

Sequence
tccatttcctatcacctagtttgt[G/A]agtgcacaatcttcactaagtatt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MEF2B_HUMAN RELB_HUMAN IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEF2B_HUMAN 0.94 -0.94 1.9·10-31.00 1.00 n/a No Hit
RELB_HUMAN 2.69 -2.48 8.0·10-31.00 1.00 n/a No Hit
IKZF2_HUMAN 1.47 -0.74 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP celiac disease,  hdl cholesterol,  hip bone mineral density (bmd),  lp-pla2 mass,  mitral annular calcium,  neuroticism,  spine bone mineral density (bmd)
GTEx eQTL Skin_Sun_Exposed_Lower_leg

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