rs1006974 chr10:71985718 C>T
- Sequence
ttttgacataacagtagattcaca[C/T]gcaattttaataaattgtacagag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) macrophages form periferal blood
- ASB for transcription factors
- ARNT_HUMAN COT1_HUMAN SRF_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 3.14 | -2.83 | 1.00 | n/a | No Hit | |||
| COT1_HUMAN | 3.44 | n/a | 1.00 | n/a | No Hit | |||
| SRF_HUMAN | 1.81 | -1.63 | 1.00 | n/a | No Hit | |||
| ATF7_HUMAN | 2.13 | -3.73 | 1.50 | n/a | No Hit | |||
| ARI3A_HUMAN | 2.82 | -2.71 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), hdl cholesterol, infant head circumference, mitral annular calcium, salmonella-induced pyroptosis, total cholesterol
GTEx eQTL Adrenal_Gland, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis, Thyroid