rs1007407 chr14:68980243 T>C

Sequence
cacacgcctgacagatggggaaac[T/C]gaggctcaaagagccgagcgcgga
ASB in cell types
HT1080 (fibrosarcoma)
ASB for transcription factors
SSRP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSRP1_HUMAN 1.41 0.13 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  college completion,  height,  obesity with early age of onset (age >2),  rheumatoid arthritis,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Lung,  Prostate,  Testis

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