rs1009181 chr6:26158765 T>C
- Sequence
gtactagaaattgagtgctatggg[T/C]acgtattagatcgttagctcattt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) SET2 (Adult acute megakaryoblastic leukemia, Homo Sapiens)
- ASB for transcription factors
- ESR1_HUMAN ILF3_HUMAN STAT1_HUMAN SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.07 | 1.08 | 1.38 | n/a | No Hit | |||
| ILF3_HUMAN | 3.44 | n/a | 3.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.30 | -0.09 | 1.67 | n/a | No Hit | |||
| SMAD3_HUMAN | 1.74 | -0.60 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, coronary artery disease (cad), educational attainment, height, myopia, sporadic creutzfeldt-jakob disease, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood