rs1010848 chr8:23494246 T>G

Sequence
ttttattttgttccagacaccctt[T/G]tcagggaagtagatcagggaggcc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
GATA1_HUMAN TAL1_HUMAN SOX6_HUMAN CEBPD_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA1_HUMAN -1.34 1.81 1.002.1·10-5 1.90 -0.04 Weak Discordant
TAL1_HUMAN 0.73 0.67 1.001.5·10-4 1.93 n/a No Hit
SOX6_HUMAN n/a 0.78 1.007.2·10-3 2.00 n/a No Hit
CEBPD_HUMAN n/a 2.69 1.000.01 2.00 n/a No Hit
NCOR1_HUMAN n/a 0.30 1.000.01 2.00 n/a n/a
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Motif analysis

GATA1_HUMAN Weak Discordant
GATA1_HUMAN pic

Genetic associations

GRASP age at death with kuru exposure,  autism,  spine bone mineral density (bmd)
GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Whole_Blood

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