rs1012027 chr6:78615156 C>T

Sequence
atcaatttttaactttaatgtttc[C/T]gtgaataggacagcctcagtgtag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ZBT40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT40_HUMAN 2.75 -2.55 5.0·10-31.00 1.00 0.67 Weak Discordant
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Motif analysis

ZBT40_HUMAN Weak Discordant
ZBT40_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  hdl cholesterol change with statins,  neuroticism
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid

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