rs1014606 chr10:28735198 G>C
- Sequence
gagatcgctgtgggctggagatga[G/C]tcgtcccaatagtattggttgctc
- ASB in cell types
- HepG2 (hepatoblastoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TCF21_HUMAN MAFK_HUMAN ATF3_HUMAN SP130_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | n/a | 3.12 | 2.00 | n/a | No Hit | |||
| MAFK_HUMAN | n/a | 1.74 | 2.00 | n/a | No Hit | |||
| ATF3_HUMAN | n/a | 2.52 | 3.50 | 3.96 | Concordant | |||
| SP130_HUMAN | -2.75 | 2.65 | 1.00 | n/a | n/a | |||
| RFX1_HUMAN | -1.14 | 1.22 | 1.67 | n/a | No Hit |
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Motif analysis
