rs10149141 chr14:28382979 C>T
- Sequence
tgagccacagggaacagcatatca[C/T]gtactctttgctgaactgctgttc
- ASB in cell types
- ZR-75-1 (invasive ductal carcinoma) MDA-MB-453 (breast adenocarcinoma) HeLa S3 (cervical adenocarcinoma) foreskin keratinocyte
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | n/a | 3.00 | 2.00 | 3.44 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), obesity with early age of onset (age >2), total cholesterol