rs10152178 chr15:87154857 G>A
- Sequence
ttagaacccagtaaggggaaagtg[G/A]ctcaatgcagactatattttcttg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HCASMC (Human coronary artery smooth muscle cells) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- JUND_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUND_HUMAN | n/a | 2.72 | 1.33 | 6.33 | Concordant | |||
| GCR_HUMAN | n/a | 2.40 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP fasting blood glucose, systolic blood pressure (sbp), total cholesterol, transmission distortion