rs1015644 chr2:75640803 T>C
- Sequence
tccacacagctgagaaacaatttt[T/C]tttcttccagccacgtggaggaaa
- ASB in cell types
- A549 (lung carcinoma) THP-1 (acute monocytic leukemia) epidermal keratinocytes astrocytes of cerebellum
- ASB for transcription factors
- TF65_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.66 | -0.38 | 2.00 | n/a | No Hit | |||
| SMC3_HUMAN | 0.94 | 1.12 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid