rs10157201 chr1:168203386 A>G

Sequence
gaggtctgctcccagtggggaatg[A/G]gcatgaaattgttgcacaagacca
ASB in cell types
T47D (invasive ductal carcinoma) MSC (mesenchymal stem cells)
ASB for transcription factors
CEBPB_HUMAN PRGR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN 1.66 0.31 5.5·10-31.00 1.30 n/a No Hit
PRGR_HUMAN -1.09 1.58 1.000.02 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP blood pressure response to candesartan treatment,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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