rs10160759 chr11:124946092 T>C

Sequence
attctgctcgtctcttttagtctc[T/C]aatatttaccaatggacttatctc
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.18 1.98 1.009.8·10-31 1.65 0.12 Weak Concordant
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Motif analysis

FOXA1_HUMAN Weak Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  college completion,  infant head circumference,  ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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