rs10162726 chr15:80999804 G>A

Sequence
tgtgttgggctgggcaccttagag[G/A]acctgtttcaggactgcgtgactg
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
ASB for transcription factors
SPI1_HUMAN ETS1_HUMAN ANDR_HUMAN SMCA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.50 0.34 4.2·10-61.00 1.00 n/a No Hit
ETS1_HUMAN 1.87 -1.24 7.9·10-41.00 1.00 n/a No Hit
ANDR_HUMAN 2.22 -0.45 0.021.00 2.46 n/a No Hit
SMCA4_HUMAN 1.33 0.42 0.040.91 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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