rs1016496 chr20:45456820 A>G

Sequence
cctggagagtgtcacctgtccctc[A/G]ggttctcgtttacaacagaaggtg
ASB in cell types
K562 (myelogenous leukemia) PC9 (lung adenocarcinoma)

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
K562 (myelogenous leukemia) -0.09 0.94 1.000.01 2.00
PC9 (lung adenocarcinoma) -1.19 1.64 1.000.03 1.00
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  hdl cholesterol,  parkinsons disease,  plasma progranulin levels,  rheumatoid arthritis,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Spleen,  Thyroid

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