rs10166997 chr2:11129925 C>G

Sequence
ccgccccttcagctccttccctcg[C/G]gctcccaagctccggggcccctga
ASB in cell types
GM02630 (Fanconi anemi) 2588 (Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 3.56 0.49 1.1·10-61.00 1.03 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP refractive error,  total cholesterol change with statins
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Thyroid

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