rs10169685 chr2:88016805 G>A
- Sequence
cccgggaggcgtggccaccaaggg[G/A]ccgggccctgcacagcgccctggg
- ASB in cell types
- K562 (myelogenous leukemia) GM12892 (female B-cells lymphoblastoid cell line) MDA-MB-231 (breast adenocarcinoma) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN CDN1B_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.83 | 0.96 | 1.22 | -3.70 | Concordant | |||
| ANDR_HUMAN | 0.08 | 2.85 | 1.83 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.23 | 1.84 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 0.57 | 2.13 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Thyroid