rs10170646 chr2:54572469 T>C
- Sequence
ataacagtgtgagtaatgctttgc[T/C]agaagccaggcagttaaatcacac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) TF-1 (erythroleukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ATF7_HUMAN TCF21_HUMAN JUN_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | 3.34 | n/a | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 2.17 | -2.93 | 6.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.40 | 0.99 | 1.16 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.03 | 0.51 | 1.89 | n/a | No Hit | |||
| CDK9_HUMAN | -0.99 | 1.31 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood