rs10170822 chr2:209391014 C>T
- Sequence
ggtaccatttagtgctctaaagtg[C/T]ttatttacttgataatagtcgagt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN TLE3_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.18 | 1.55 | 2.03 | 4.90 | Concordant | |||
| TLE3_HUMAN | n/a | 2.87 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 0.14 | 1.80 | 2.00 | 4.42 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Thyroid