rs10170998 chr2:8575015 A>G
- Sequence
aatgggttggctcatccatctacc[A/G]cttccccaaaatagattcctgccc
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SPI1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.51 | -1.11 | 1.69 | -2.69 | Concordant | |||
| FOXK2_HUMAN | -2.52 | 2.62 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Kidney_Cortex, Liver, Minor_Salivary_Gland, Pancreas, Pituitary, Prostate, Spleen, Stomach, Thyroid, Whole_Blood