rs10172023 chr2:151619514 C>G
- Sequence
gtcattctggtcgggcaggcagat[C/G]cattcatgcagaggatgtttatag
- ASB in cell types
- K562 (myelogenous leukemia) BJ (fibroblasts)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN P63_HUMAN ZNF24_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -0.66 | 0.66 | 1.00 | n/a | No Hit | |||
| ATF7_HUMAN | -0.93 | 0.93 | 1.00 | n/a | No Hit | |||
| P63_HUMAN | 2.35 | -1.88 | 1.00 | -0.65 | Weak Concordant | |||
| ZNF24_HUMAN | -0.43 | 1.62 | 1.25 | 1.56 | Weak Concordant | |||
| FOXK2_HUMAN | -0.69 | 1.50 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood