rs10173105 chr2:159286091 G>C
- Sequence
tacccaggacctgccttggggtag[G/C]gggggcggtgtgggcgttccctcg
- ASB in cell types
- GM01310 ( Transformed lymphovlasoid cell line ) 22RV1 (prostate carcinoma) breast tumor MCF10A (breast epithelial cells)
- ASB for transcription factors
- AHR_HUMAN ANDR_HUMAN ESR1_HUMAN TEAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AHR_HUMAN | 0.46 | 2.85 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | 3.07 | -5.64 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 3.33 | 0.23 | 1.75 | n/a | No Hit | |||
| TEAD4_HUMAN | -0.49 | 2.41 | 1.25 | n/a | No Hit | |||
| TF65_HUMAN | 1.86 | -1.31 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid