rs10173339 chr2:8574756 T>C
- Sequence
ggggacatcggcctggaggcctcc[T/C]agcccccatcgggcaaagagcacc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells lymphoblastoid cell line) | -2.24 | 2.36 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Kidney_Cortex, Liver, Minor_Salivary_Gland, Pancreas, Pituitary, Prostate, Spleen, Stomach, Thyroid, Whole_Blood