rs10173427 chr2:8574859 T>C
- Sequence
caggcttctgcatccctgcagaca[T/C]agtgtgcggggaggcgtttggagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | n/a | 3.14 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Kidney_Cortex, Liver, Minor_Salivary_Gland, Pancreas, Pituitary, Prostate, Spleen, Stomach, Thyroid, Whole_Blood