rs10173538 chr2:159712765 C>T
- Sequence
cgaagaggcctggggacgcggagg[C/T]cgcttcctctcaggatgaggtgga
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes MOLM14 (Adult acute myeloid leukemia) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- SPI1_HUMAN KMT2A_HUMAN STAT1_HUMAN ZN770_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.37 | -0.08 | 1.37 | -0.31 | Weak Concordant | |||
| KMT2A_HUMAN | 1.83 | 0.06 | 1.09 | -2.79 | Concordant | |||
| STAT1_HUMAN | 2.89 | -4.33 | 2.00 | -0.09 | Weak Concordant | |||
| ZN770_HUMAN | 2.24 | n/a | 1.50 | -0.67 | Weak Concordant | |||
| CDK8_HUMAN | 1.76 | -0.22 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
EMBL-EBI granulocyte count, neutrophil count, sum basophil neutrophil counts, sum neutrophil eosinophil counts
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood