rs10175222 chr2:50536507 G>T
- Sequence
atttctattttcatttttgccata[G/T]gtagtagcggaatattgccacagg
- ASB in cell types
- THP-1 (acute monocytic leukemia) A549 (lung carcinoma) HeLa S3 (cervical adenocarcinoma) adrenal gland
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN PKNX1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.00 | 2.46 | 1.53 | n/a | No Hit | |||
| RAD21_HUMAN | -0.09 | 2.06 | 1.21 | n/a | n/a | |||
| SMC3_HUMAN | -0.53 | 1.56 | 1.20 | n/a | n/a | |||
| PKNX1_HUMAN | n/a | 3.22 | 2.00 | n/a | No Hit |
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