rs10177030 chr2:75710675 C>T
- Sequence
ggccccggccacgagggccccgaa[C/T]ccggtggggcagtcccgccacctg
- ASB in cell types
- HepG2 (hepatoblastoma) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) GBM39 (Human brain tumor)
- ASB for transcription factors
- BRD4_HUMAN GABPA_HUMAN KLF11_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.82 | 0.07 | 1.44 | n/a | n/a | |||
| GABPA_HUMAN | 0.16 | 1.40 | 1.54 | n/a | No Hit | |||
| KLF11_HUMAN | n/a | 3.12 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | 2.37 | 0.18 | 1.64 | n/a | No Hit | |||
| SMAD4_HUMAN | -1.89 | 2.47 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood