rs10179340 chr2:3519553 A>G
- Sequence
ctcggagcccgtcggccgcgcttt[A/G]tcttatagggaggcgtggacgcgc
- ASB in cell types
- 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- ANDR_HUMAN TBP_HUMAN RFX5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.95 | 3.29 | 2.00 | n/a | No Hit | |||
| TBP_HUMAN | 0.23 | 1.32 | 2.00 | n/a | No Hit | |||
| RFX5_HUMAN | 2.23 | -2.58 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood