rs10179444 chr2:35529705 A>G
- Sequence
tgctctaagccctaaggctgtact[A/G]tcagatggtgttgaagtccttctg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN GATA3_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.50 | -0.84 | 1.50 | n/a | No Hit | |||
| GATA3_HUMAN | 2.13 | -0.06 | 1.70 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.02 | -1.69 | 1.00 | 5.18 | Discordant |
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Motif analysis
