rs10179654 chr2:102305323 T>G
- Sequence
gaacaaagatctgttgaataaata[T/G]tatgagcgtgtagaagggagagac
- ASB for transcription factors
- NOTC1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NOTC1_HUMAN | 1.82 | n/a | 2.00 | n/a | n/a | |||
| FOXA1_HUMAN | n/a | 1.83 | 2.00 | -0.93 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Testis, Thyroid, Whole_Blood