rs10181951 chr2:71506401 G>C

Sequence
ccaaggcagcagacgagggcgacc[G/C]aggttaccctgctccagggcagcg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN NCOA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN -0.23 2.33 1.001.8·10-26 2.29 1.51 Weak Concordant
NCOA3_HUMAN -3.79 3.10 1.003.1·10-3 1.00 n/a n/a
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Motif analysis

ESR1_HUMAN Weak Concordant
ESR1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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