rs10181959 chr2:36973596 A>T

Sequence
agtgggagtggttggaaccagctt[A/T]tatacactttcacgtgaactctaa
ASB in cell types
K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
NOTC1_HUMAN MTG16_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NOTC1_HUMAN 2.54 -1.75 0.021.00 2.00 n/a n/a
MTG16_HUMAN 1.50 n/a 0.021.00 2.00 n/a n/a
KDM1A_HUMAN 2.46 -0.04 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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