rs10183437 chr2:42196543 A>G
- Sequence
acaaatctagactgtgagactatg[A/G]taagagttccgtctgccatgtctg
- ASB in cell types
- K562 (myelogenous leukemia) embryonic stem cells derived definitive endoderm
- ASB for transcription factors
- RING2_HUMAN HDAC1_HUMAN ATF7_HUMAN MTA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RING2_HUMAN | 3.79 | n/a | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 3.17 | n/a | 2.00 | n/a | n/a | |||
| ATF7_HUMAN | 2.84 | n/a | 2.00 | n/a | No Hit | |||
| MTA1_HUMAN | 3.03 | -5.36 | 2.00 | n/a | n/a | |||
| P66B_HUMAN | 3.43 | 0.01 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid