rs10184655 chr2:10841981 T>C
- Sequence
atcacataacctgggtttccctgt[T/C]gtcatctgtcttgtcaatccacat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN CREB1_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.24 | 1.51 | 2.13 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.25 | 2.31 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | n/a | 2.70 | 3.25 | 4.03 | Concordant | |||
| GATA3_HUMAN | n/a | 1.19 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Muscularis, Testis